bioinformatics chat

Spectrum-preserving string sets and simplitigs with Amatur Rahman and Karel Břinda (#42)

February 28, 2020

In this episode, we hear from Amatur Rahman and Karel Břinda, who independently of one another released preprints on the same concept, called simplitigs or spectrum-preserving string sets. Simplitigs offer a way to efficiently store and query large sets of k-mers—or, equivalently, large de Bruijn graphs.

Links:

Music: Eric Skiff — Come and Find Me (modified, licensed under CC BY 4.0).

Subscribe to the bioinformatics chat on Apple Podcasts, Pocket Casts, Spotify, or any other podcasting app via the RSS feed link. You can also follow the podcast on Mastodon and Twitter and support it on Patreon.