The bioinformatics chat is a podcast about computational biology, bioinformatics, and next generation sequencing.
The bioinformatics chat is produced by Roman Cheplyaka.
Don't miss the next episode!
November 13, 2017
Guillaume Filion recently published a preprint in which he applies
generating functions, a concept from analytic combinatorics,
to estimating the optimal seed length for read mapping.
In this episode, Guillaume and I attempt to explain the core concepts from
analytic combinatorics and why they are useful in modeling sequences.
October 21, 2017
Jennifer Lu joins me to discuss species abundance estimation from metagenomic sequencing data.
October 8, 2017
In this episode Filippo Castiglione and I discuss different ways to model the immune system.
#11 Collective cell migration with Linus Schumacher
#10 Spatially variable genes and SpatialDE with Valentine Svensson
#9 Michael Tessler and Christopher Mason on 16S amplicon vs shotgun sequencing
#8 Perfect k-mer hashing in Sailfish
#7 Metagenomics and Kraken
#6 Allele-specific expression
#5 Relative data analysis and propr with Thom Quinn
#4 ChIP-seq and GenoGAM with Georg Stricker and Julien Gagneur
#3 miRNA target site prediction and seedVicious with Antonio Marco
#2 Single-cell RNA sequencing with Aleksandra Kolodziejczyk
#1 Transcriptome assembly and Scallop with Mingfu Shao