bioinformatics chat

the bioinformatics chat

The bioinformatics chat is a podcast about computational biology, bioinformatics, and next generation sequencing.

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Relative data analysis and propr with Thom Quinn

June 10, 2017 | show notes

In this episode, Thom Quinn and I explore different ways to transform and analyze relative data arising in genomics.

We also discuss propr, Thom’s R package to compute various proportionality measures.

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ChIP-seq and GenoGAM with Georg Stricker and Julien Gagneur

May 29, 2017 | show notes

In this episode I meet with Georg Stricker and Julien Gagneur from the Technical University of Munich to discuss ChIP-seq data analysis and their tool, GenoGAM.

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miRNA target site prediction and seedVicious with Antonio Marco

May 12, 2017 | show notes

In this episode Antonio Marco talks about miRNA target site prediction and his tool, seedVicious.

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Single-cell RNA sequencing with Aleksandra Kolodziejczyk

April 29, 2017 | show notes

In this episode Aleksandra Kolodziejczyk talks about single-cell RNA sequencing.

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Transcriptome assembly and Scallop with Mingfu Shao

April 16, 2017 | show notes

In this episode Mingfu Shao talks about Scallop, an accurate reference-based transcript assembler.

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